tracker.h

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//##############################################################################
 //##############################################################################

#ifndef TRACKER_H
#define TRACKER_H
#ifdef __linux
    #include<omp.h>
#elif __APPLE__
#endif
#include<math.h>
#include<vector>
#include<stdio.h>
#include<cuda.h>
#include<cuda_runtime.h>
#include "vort.h"

//##############################################################################

namespace Tracker {

    static const double lsq[3][4] = {{-0.5, 0.5,  -0.5, 0.5},
                                     {-0.5, -0.5, 0.5,  0.5},
                                     {0.75, 0.25, 0.25, -0.25}};


    int findVortex(int *marker, const double2* wfc, double radius, int xDim, const double *x, int timestep);

    void vortPos(const int *marker, std::vector<std::shared_ptr<Vtx::Vortex> > &vLocation, int xDim, const double2 *wfc);

    void olPos(int *marker, int2 *vLocation, int xDim);

    [[deprecated]]
    std::shared_ptr<Vtx::Vortex> vortPosDelta(int *cMarker, int2 *pMarker, double *x, double tolerance, int xDim);

    std::shared_ptr<Vtx::Vortex> vortCentre(const std::vector<std::shared_ptr<Vtx::Vortex> > &cArray, int xDim);

    double vortAngle(const std::vector<std::shared_ptr<Vtx::Vortex>> &vortCoords, const std::shared_ptr<Vtx::Vortex> central);

    double vortSepAvg(const std::vector<std::shared_ptr<Vtx::Vortex> > &vArray, const std::shared_ptr<Vtx::Vortex> centre);


    double sigVOL(const std::vector<std::shared_ptr<Vtx::Vortex> > &vArr, const int2 *opLatt, const double *x);

    int findOLMaxima(int *marker, double *V, double radius, int xDim, double *x);

    void vortArrange(std::vector<std::shared_ptr<Vtx::Vortex> > &vCoordsC, const std::vector<std::shared_ptr<Vtx::Vortex>> &vCoordsP);

    int phaseTest(int2 vLoc, double2 *wfc, int xDim);

    void lsFit(std::vector<std::shared_ptr<Vtx::Vortex>> &vortCoords, const double2 *wfc, int xDim);
}

#endif